For information on linking git commits to Jira, see Linking git commits to Jira issues.
Create a branch and associate it to a Jira issue
Associate branches to a Jira issue by inserting the Jira issue key to the branch name when creating them.
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Select the master branch dropdown.
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Enter a new branch name on the search box. Mention a Jira issue key in the name to associate it to the said Jira issue.
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Click the result to create the new branch.
Create a pull request and associate it to a Jira issue
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Set base and compare as required. (branch to master)
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Enter a new pull request title on the provided box. Mention a Jira issue key in the title to associate it to the said Jira issue.
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Also, mentioning a Jira issue key on the description will associate this pull request to the said Jira issue.